Bin LIU

The Chair Professor in the Faculty of Engineering at SMBU

The head of the Group of Computer Science and Engineering

The director of the Lab of Bioinformatics and Biological Big Data

劉濱

工程系首席教授

計算機科學與工程團隊負責人

生物信息學與生物大數據分析實驗室主任

He received the bachelor’s, master’s degrees from the Harbin Engineering University in 2004 and 2007 respectively. He received the PhD degree from the Harbin Institute of Technology in 2010 and has been awarded the National Outstanding Young Scholar (2023), the National Excellent Young Scholar (2018), the Guangdong Outstanding Young Scholar (2016), the Beijing Outstanding Young Scholar (2019), and the CCF Outstanding Member. He has published more than 130 SCI papers in top-tier journals such as Bioinformatics, Nucleic Acids Research, PLoS Computational Biology, and BMC Biology, many of which have been selected as China's 100 Most Influential International Academic Papers. He serves as the deputy director of the Biomedical Data Mining and Computational Professional Group of the Bioinformatics Society, member of the Bioinformatics Special Interest Group (SIG) of China Computer Federation (CCF), member of the Professional Committee of Bioinformatics and Artificial Life of the China Association for Artificial Intelligence, the first member of the Professional Committee of Intelligent Health and Bioinformatics of the Chinese Association of Automation (CAA), and the executive director of the Computational Systems Biology Branch of the Operational Research Society of China (ORSC). He has won the Ho Ying-Tong Young Teachers Fund of Ministry of Education, the Shenzhen Youth Science and Technology Award, and the Second Prize of the Ministry of Education's Natural Science Award (first contributor).

Research interests: Big Data, Natural Language Processing and applications in the analysis of Life and Health Big Data

2004、2007年分別獲得哈爾濱工程大學學士和碩士學位。2010年在哈爾濱工業大學獲得博士學位、曾獲國家杰青（2023）、國家優青（2018）、廣東省杰青（2016）、北京市杰青（2019）、CCF杰出會員。在Bioinformatics、Nucleic Acids Research、PLoS Computational Biology、BMC Biology等權威期刊發表SCI論文130余篇，其中多篇論文入選中國百篇最具影響國際學術論文，擔任生物信息學學會生物醫學數據挖掘與計算專業組副主任、中國計算機學會生物信息學專委會委員、中國人工智能學會生物信息學與人工生命專委會委員、中國自動化學會智能健康與生物信息專委會首屆委員、中國運籌學會計算系統生物學分會常務理事，曾獲教育部霍英東青年教師基金、深圳市青年科技獎、教育部自然科學二等獎（第一完成人）等。

研究方向：主要從事大數據、自然語言處理、及其在生命健康大數據分析的應用研究。

Selected Papers

1. Ke Yan; Hongwu Lv; Yichen Guo; Wei Peng; Bin Liu*; sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure, Bioinformatics, 2023, 39(1): btac715

2. Yi-Jun Tang, Ke Yan, Xingyi Zhang, Ye Tian, Bin Liu*. Protein intrinsically disordered region prediction by combining Neural Architecture Search and Multi-objective genetic algorithm. BMC Biology 2023; DOI: 10.1186/s12915-023-01672-5

3. Ke Yan; Hongwu Lv; Yichen Guo; Yongyong Chen; Hao Wu; Bin Liu*; TPpred-ATMV: therapeutic peptide prediction by adaptive multi-view tensor learning model, Bioinformatics, 2022, 38(10): 2712-2718

4. Yihe Pang; Bin Liu*; DMFpred: Predicting protein disorder molecular functions based on protein cubic language model, PLOS Computational Biology, 2022, 18(10): e1010668

5. Jun Zhang; Ke Yan; Qingcai Chen; Bin Liu*; PreRBP-TL: prediction of species-specific RNAbinding proteins based on transfer learning, Bioinformatics, 2022, 38(8): 2135-2143

6. Wenxiang Zhang; Bin Liu*; iSnoDi-LSGT: identifying snoRNA-disease associations based on local similarity constraints and global topological constraints, RNA, 2022, 28(12): 1558-1567

7. Hong-Liang Li; Yi-He Pang; Bin Liu*; BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models, Nucleic Acids Research, 2021, 49(22):e129

8. Xiaopeng Jin; Qing Liao; Bin Liu*; S2L-PSIBLAST: a supervised two-layer search framework based on PSI-BLAST for protein remote homology detection, Bioinformatics, 2021, 37(23): 4321-4327

9. Jun Zhang; Qingcai Chen; Bin Liu*; iDRBP_MMC: Identifying DNA-Binding Proteins and RNA Binding Proteins Based on Multi-Label Learning Model and Motif-Based Convolutional Neural Network, Journal of Molecular Biology, 2020, 432(22): 5860-587

10. Bin Liu*; Xin Gao; Hanyu Zhang ; BioSeq-Analysis2.0: an updated platform for analyzing DNA, RNA and protein sequences at sequence level and residue level based on machine learning approaches, Nucleic Acids Research, 2019, 47(20): e127